Hang on. I am all for saving a ski, but think for a second. The motor is now toast. So is the hull. Look around and you can still find a running GTX in the $5-700 range with a decent hull. I would part out what you have left. Hang onto the MPEM, and pump and anything else you want for spares. Or sell the MPEM and pump to subsidize your clean up of your new ski. Look at my Shamu thread. I have a total of about $1200 in it and it is like new. Yes, my motor has about 200 hours on it, but it should last for many more with a great clean rebuilt fuel system.
Food for thought.... I hate it you killed the motor, but now there is not much sense sinking more time and money into this.