If you need to remove engine, when i do it i leave the mounts and shims bolted in place and remove the engine from the mounts. have done this a few times and haven't had to realign yet. If you do a pressure test on the motor and it holds pressure for 10secs then the gaskets are fine and you don't need to pull motor.
If you pull the carbies you can pull them apart and find what jets are being used.
Does then boat still have the grey fuel lines if so you need to replace them and clean the fuel system, baffle, selector switch, filters, screens in carbies, jets.