Do not forget to pull all air the intake plastic ducts and rubber hoses to drain and look for water as well.
Start at the supercharger and follow the trail of hoses and ducts in the opposite direction of your intake manifold.
Glad to hear you have it running. Hope you are feeling better.
I recently replaced the supercharger heat exchanger (Inside manifold style) on my 2005 RXT. A very easy way to inspect for water and dry out the intake (without removing it) is pull the heat exchanger out of the intake. Buy new HE seals before you put it back in and grease them up prior to assembly.
If you have water anywhere in the intake system, it will gradually make its way into the engine which can prolong your efforts to remove it.
If you have not rebuilt the Super Charger before and do not have the tools for it, you may want to send it out. There is s seal (item #17) which should keep water from entering the bearings from the "air intake" side however I am not sure if the person (
skiasylum) who mentioned a rebuild may be under the impression water coming through the oil could be trapped in the bearings.
2005 Sea-Doo RXT Supercharger V1 Sea-Doo | Sea-Doo Warehouse