OK...If you are still interested.
I think a lot of people are use to wiring car audio and think they just do it the same way in a boat. I did mine a little different. I think the boat came with an on/off battery switch for a reason. Most people don't use their boats every day or every week like they do a car. Anything connected to the battery may drain the battery down over a period of sitting. So by using the battery switch you are totally disconnecting everything. It is nice to have a place to disconnect all power while the boat is stored or not in use. In car audio, the amp is usually connected directly to the battery. In boats, this is not necessary, and I dont recomend it. By hooking the positive cable to the battery switch, you can make sure it is not drawing anything when the switch is off.
As far as using the combo position switch with 1,2,all or off. You just hook it to the post on the back that you hook the starter and other wires to. You hook 1 battery to the 1 and 2 post, then eveything else that you want to be switched on to the common post.
When the battery is on 1, everything will be drawing power from that battery and only that battery is charged. Same thing on 2, just that battery is used and charged. When on all, both batteries are being used and charged.
If you hook the amp directly to one battery, you dont have the option of using that 2nd battery, you are not connected to it.
I have my audio system all hooked to the on/off switch. I am adding the 2nd battery this week with the combo switch and will make a how to section and add pics for everyone. It really is an easy concept...As with anything electrical, make sure to use proper wire and an inline fuse or circuit breaker. I used all 4 gauge wire and an inline 75 amp fuse.