I wouldn't be too quick to spend the money on the pin puller just for one rebuild. It's desinged to retain the needle bearings in the rod when you take it apart. The piston pin itself floats & can usually be pushed out with a finger After you pull one clip, however the loose needle bearings will fall as the pin comes out. If you replace the bearings with the caged type, it won't matter. I have also reinstalled loose needle bearings using a dab of sythetic assembly grease to hold them in place while you slip the pin back in. Its really not a big deal.
While I have not pulled a flywheel off of a 787, I know that a inexpensive 3-bolt automotive harmonic ballance puller will pull the flywheel off of the smaller engines. Be sure to get the PTO flywheel off first . I found that out the hard way......
What's a caged type bearing and why do I have to pull the PTO off, as I wasn't planning do to since I was only cleaning engine in case any rotary disc shavings got in there?
You only need to take it off if you want to change the rear crank seal, otherwise pull away.
I'm not trying to take advantage of, or de-tune your ski for you. I always love adding more performance parts to my stack, but my thought is that the pipe may have contributed to that cylinder having low compression. Also I can't tell if it is a rec or race version. I have a rec one and I read that they are not much of an improvement. I like the way it is so light but have not tried it myself yet. If yours is a race version then I would offer more. I would send you a stock one with the welch plug professionally welded over because all stock ones that are not leaking will soon. I just didn't know what direction you wanted to go. If you re-use the pipe then make sure they have changed the jets in the carbs to match it.
How much material have you sanded off the bottom of those barrels ?
Sselzer
Depending on how much you grooved them. You could have caused a problem. They are made to be a certain height. So the piston doesn't hit the head. l would try to smooth them the best I could with out taking off too much. They do have to be flat also.