Well...... the stock speedo's lie... but, if you are hitting 60 on it... then that ski is running in top shape.
OK... the truth about an intake grate. There are a bunch of different styles, and they are all a "Give and Take." If you ride in smooth water, then a shallow grate will help keep the hull in the water, and improve overall handling. If you are running in choppy water, a "Top loader" grate will be best for you. The top loader design helps keep the pump loaded as the hull bounces off the tops of the waves, and in turn, you achieve a better top speed. BUT.... an aggressive top loading grate will slow you down on smooth water.
I recommend at least a deep single scoop as a replacement from the stock as it will significantly ride better, and stay hooked up better.
A word on engine mods....
Yes... they are wonderful, but for the average person, the money spent isn't worth the performance gained or the reliability lost. Group K has been building race engines forever, and they know their internal mods... but even if you buy one of their "Hammer kits"... you normally gain about 5 mph up top. Plus you have to burn premium fuel, and the life of the engine will drop. AND (here is the give and take thing again) you normally start to have low to mid RPM drivabillity problems. It's kind of funny... if you look on their site for boat mods, then have a very long technical document... and in the end it basically says... don't do any for reliability.
OK... I know that's not what you wanted to hear... so here's what you want. The best bang for the buck is having the head shaved. If you bring up the compression slightly, it will make a noticeable difference out of the hole, and give you few MPH up top. Also, an after market impeller is almost always a good investment.. (Skat-trak swirl for out of the hole, and Solas Concord for top speed and fuel economy)
If you want to get crazy... but a new tuned pipe from "Factory Pipe." They are getting about a 20% gain in power over stock, with no other mods. They are expensive... but work very well.
So... there you have it in a nutshell.