According to the owner's manual that came with my 2006 RXT, "... use your weight to rotate the watercraft in any direction.... If watercraft has been capsized for more than 5 minutes, do NOT attempt to crank engine to avoid water ingestion that would damage the engine. See an autorized Sea-Doo dealer as soon as possible."
So I'm guessing the fact that the engine was running, blowing water out of the exhaust manifold and into the waterbox when it rolled over, you have no significant amount of water actually in the exhaust manifold (at least initially) after capsizing. Thus no particular direction of rotation is needed to safely upright it. The 4-TEC engines also have a safety system called T.O.P.S. which automatically stops the engine and shuts off oil flow so oil cannot leak into the intake system upon capsizing.
If you upright it within a minute or two, you should be able to board and restart the engine with no problems whatsoever.
Regards!
- Michael