Not familiar with any gray engine DOOs. But if the pumps are the same/similar to earlier DOOs I would cap that main pump inlet. If the smaller lines are still hooked up, all the gearing is in place and the pump is still turning then there is a chance of pulling water into the pump and injecting it, small amounts, in through the pump. This is if the hull ever gets a good amount of water in it up to the pump inlet level.
Sea-Doo oil injection pumps are VERY reliable and I don't understand why so many people delete the system..... If you can, as stated earlier, hook the system back in and avoid premixing. You have a far greater chance of accidentally running straight gas, and killing the motor, than you do of ever having that pump fail.
The only time any rotax oil pumps have been know to fail have been on the fan cooled snowmobiles. Even then it was not the pump, but the plastic shaft/gear that ran from the end of the crankshaft, through the recoil starter and to the pump mounted on the starter. The shaft would twist over time and slip in the crank end, but the pumps themselves never failed.
HOWEVER. The pump also relys on oil to lube it since it has moving parts. If it has been run dry then I would make sure mixed gas is already in the tank and do an operational check on the oil pump before I started throwing straight gas back in. The oil pump might be damaged due to lack of oil.