Yeah, wel there are a number of things all going on at once, like the boat getting up on plane and breaking free, the raves opening up too early could make the low end mushy, the amount of water in the tuned pipe down low on the throttle could be insufficient, that pipe fills up to keep the chamber size matched and then clears out as the power band comes in too. Oh, and the timing advances as all this is happening....
Maybe if you just try putting around at no-wake speed, say 2500-3000 RPM and hold the throttle in one position, does it load up on fuel and choke out? If too rich, it will, RPM's will just keep dropping till there's so much fuel the plugs can't fire. If you can set the idle mixture too lean by turning the screws in that it runs out of fuel and dies at least then you can balance the amount of fuel it needs to maintain a constant idle that doesn't drop off due to loading up. I mean if it can sit there and idle without loading up and finally quitting, then it's time to open the throttle and hold it at a higher RPM and see if it loads up enough to the point it loads up with fuel. If it keeps loading up with fuel that means you have to keep adjusting the throttle or restarting with WOT to clear it out. A little four stroking is just a sign there's almost too much fuel at a certain spot in the throttle and you might be able to clean it up with just a pilot size change but if it loads up and chokes on fuel then it's not close enough. Four stroking on the trailer doesn't count for much unless it's in the water, I'd expect it to four stroke on the trailer, like holding a dirt bike at part throttle in neutral, those will also four stroke no-load, Ding, ding, ding, ringing the expansion pipe. It's when it's pushing water the four stroking should clean up. Pull it out of the water and you can't really tell anything except it should sit there and gurgle like four stroking at idle. That should clean up in the water with the impeller loaded, then crack the throttle a little and preferably the response should be crisp, hold it part cracked in the same steady position and the R's shouldn't start dropping off like it's loading up.
Could be something besides just carburation, could be running like it's supposed to. Seriously, I think you have to trust your instincts some when it comes to knowing when there's too much fuel, do your eyes burn and do you smell raw gasoline?