OK.....
from your signature... it says you have a 99 sportster. that would make it a sportster 1800. (right?)
If it is... you have two 720 engines with single 40SBN pumper carbs. (so you don't have a "Mag" and "PTO" carb)
If that is the correct boat... you have separate fuel pumps, and in that case... no, you would not have the diaphragm and check valves in the carb(s).